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Mockup data as recorded in a study on Multiple Sclerosis for a single patient. The step count is recorded for every day, here visualized as a linechart. In addition, a variety of other types of data is recorded over time, e.g., by using wearables:
The analysis of medical data is relevant for many use cases, including clinical research and patient treatment. While these cases typically represent a doctors'/physicians' perspective, there is yet another user group with an immense information need: patients. In addition, other types of stakeholders involved in the medical domain are, e.g., clinics, quality management environments, operational staff, and insurances.
Chronic diseases such as Multiple Sclerosis (MS) create a huge burden for patients and their relatives. With the availability of wearables and other types of (sensor) data, it is now possible to apply data-driven approaches to contribute to patient health. Different types of techniques borrowed from Machine Learning, Data Mining, and Information Retrieval may be applied and combined to provide effective and efficient solutions for the analysis of medical and patient-related data.
Despite its benefit, the analysis of medical data comes with a series of challenges. First, data from different sources need to be combined to a unified data collection. Second, data collections such as electronic health records often have quality problems and require manual (pre-) processing. Third, algorithmic models applied to medical data need to be selected, parameterized, trained, and validated. In most cases, this process is iterative and urgently requires humans in the loop. Fourth, the analysis of model outputs is often not trivial and decisions of models are not always explainable. Finally, involved user groups such as physicians, patients, but also operational staff have very different levels of expertise and interest, which requires a careful characterization of the domain problem and analysis tasks to ensure that the tool to be built is both usable and useful.
Interactive Visual Data Analysis (IVDA) has proven to be a promising approach to medical data analysis. The particular benefit of IVDA tools is the ability to combine the strengths of both humans and machines in a unified data analysis workflow.
The goal of this thesis is to design, implement, and validate a IVDA tool to support experts in Epidemiology to study data about MS patients. From start, a multi-modal dataset will be available, as a basis for unification, data processing, and analysis. The student will have the chance to get in touch with these experts in the medical domain, to learn about the particular domain problem and analysis tasks. In an iterative design phase, a data science workflow will be designed as well as an interactive visual interface for the visual analysis of the medical data. A validation effort will be conducted to ensure that the IVDA tool is useful and usable to address the identified medical data analysis problem.
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Prof. Dr. Jürgen Bernard The applications should be sent to bernard@ifi.uzh.ch. For questions, feel free to contact Prof. Bernard using this Email as well. |
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